Category Archives: Foodmicrobionet

FoodMicrobionet 4.2.1 is now available

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I have just released a new version of FoodMicrobionet. Version 4.2.1 includes 233 studies and 13895 food and food environment samples. New tables have been added (Abstracts table) and metadata for studies (a study_type field now provides a classification in longitudinal cross-sectional or mixed for the study design) have been improved. You can access the new version:

  • on GitHub: data in the the_real_thing folder, plus a bunch of scripts
  • on Zenodo: here you can find the mindata files, with ASV sequences
  • on Mendeley data (the most recent version is in moderation, reserved DOI 10.17632/8fwwjpm79y.8)

Share (using the DOIs provided by Mendeley data and Zenodo) and enjoy. You can find the most recent publications on FMBN here.

New Foodmicrobionet publication

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Our last publication obtained using data in FoodMicrobionet is:
Parente, E., Zotta, T., Giavalisco, M., Ricciardi, A., 2023. Metataxonomic insights in the distribution of Lactobacillaceae in foods and food environments. Int J Food Microbiol 110124. https://doi.org/10.1016/j.ijfoodmicro.2023.110124
The code is pretty general and the work can be easily replicated for any other microbial group in FoodMicrobionet.
You can download a free .pdf (until 5/4/2023) here https://authors.elsevier.com/a/1gerCcF3iFHfL

Literature cited, project 2017J2RMTN

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